GÜNGÖR BUDAK

Bioinformatics Analyst at Seven Bridges & PhD Student at METU

MiClip 1.3 Installation

MiClip is a CLIP-seq data peak calling algorithm implemented in R but currently it doesn’t show up in the CRAN but you can obtain it from the archive and install from the source or tar.gz file.

Download the tar.gz file:

wget https://cran.r-project.org/src/contrib/Archive/MiClip/MiClip_1.3.tar.gz

Start R:

R

Install dependencies:

install.packages("moments")
install.packages("VGAM")

Finally install MiClip 1.3:

install.packages("MiClip_1.3.tar.gz", repos = NULL, type="source")

Then you can test it by loading the package and viewing its help file.