Below you will find pages that utilize the taxonomy term “linux mint”
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Install RDKit 2015-03 Build on Ubuntu 14.04 / Linux Mint 17
RDKit is an open source toolkit for cheminformatics. It has many functionalities to work with chemical files.
Follow the below guide to install RDKit 2015-03 build on an Ubuntu 14.04 / Linux Mint 17 computer. Since Ubuntu packages don’t have the latest RDKit for trusty, you have to build RDKit from its source.
Install Dependencies
1sudo apt-get install flex bison build-essential python-numpy cmake python-dev sqlite3 libsqlite3-dev libboost1.54-all-dev Download the Build
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ClipCrop Installation on Linux Mint 16 nvm, Node, npm Included
ClipCrop is a tool for detecting structural variations from SAM files. And it’s built with Node.js.
ClipCrop uses two softwares internally so they should be installed first.
Install SHRiMP2
SHRiMP is a software package for aligning genomic reads against a target genome.
1$ mkdir ~/software 2$ cd ~/software 3$ wget http://compbio.cs.toronto.edu/shrimp/releases/SHRiMP_2_2_3.lx26.x86_64.tar.gz 4$ tar xzvf SHRiMP_2_2_3.lx26.x86_64.tar.gz 5$ cd SHRiMP_2_2_3 6$ file bin/gmapper 7$ export SHRIMP_FOLDER=$PWD Install BWA
BWA is a software package for mapping low-divergent sequences against a large reference genome.