Güngör Budak

Bioinformatics Analyst at Seven Bridges & PhD Student at METU

Research

Publications

(2017) Transcriptome analysis of developing lens reveals abundance of novel transcripts and extensive splicing alterations
Published on Scientific Reports

(2017) Seten: a tool for systematic identification and comparison of processes, phenotypes, and diseases associated with RNA-binding proteins from condition-specific CLIP-seq profiles.
Published on RNA

(2016) ExSurv: A Web Resource for Prognostic Analyses of Exons Across Human Cancers Using Clinical Transcriptomes
Published on Cancer Informatics

(2015) Reconstruction of the temporal signaling network in Salmonella-infected human cells
Published on Front. Microbiol.

(2013) Analysis of the dataset on four breast cancer cell lines to build network models that represent the active cell signaling pathways in breast cancer
Published on Nature Methods

(2012) Contaminant detection and identification in Next-Generation Sequencing data by developing a pipeline which extracts the unmapped reads and compares the possible contaminant genomes in different databases using Perl programming language
Published on F1000Posters

(2011) Development of a web-based software that constructs functional genetic devices with the input and output parameters which are defined as the activator of promoters and the products of coding sequences, respectively
Published on IEEE Xplore

(2011) Design of a biosensor that can detect MRSA (Methicillin-resistant S. aureus)