.htaccess directions are correct,
mod_rewrite is enabled but still you are getting
404 Not Found errors…
If you’re looking for a file browser for Geany, check out TreeBrowser plugin on its page (see the page for screenshots).
If your CSS or JS files don’t seem to load or you get
403 Forbidden or
Permissions denied, all you need to do is to run following on terminal:
To get base URL of your website to generate links to your content or assets do following:
Move all content of (files in)
public/ folder one level above (to the base)
Today, I submitted in silico and experimental data network inference results on Synapse for the next leaderboard on this Wednesday.
Cytoscape is a nice tool to visualize network for better understanding and delivery. I used it for in silico data network visualization and the result was really pretty. Now, I have networks constructed using experimental data from HPN-DREAM Challenge.
As I can plot expression curves for in silico data. I moved on experimental data which is more complex and larger. This data is the result of RPPA experiments on different breast cancer cell lines and it includes protein abundance measurements for about 45 phophoproteins. These phosphoproteins are treated with different inhibitors and stimuli and by comparing their expressions, I will try to infer relations between them.
As I mentioned in my previous post, experimental data from the challenge has missing data values that create problems during analyses. To solve it, first thing I did was to optimize data, which includes detecting missing conditions and putting NAs for data values and sorting them if necessary.
As I almost finished with in silico data, I moved on to analyses of experimental data using the same script. But since the characteristics of data is somehow different, before inferring network, I need to modify the script to be able to read experimental data files.