MiClip is a CLIP-seq data peak calling algorithm implemented in R but currently it doesn’t show up in the CRAN but you can obtain it from the archive and install from the source or tar.gz file.
The latest release of RDKit (2015-03) can generate SVG images with several lines of codes but by default the generated SVG image has a white background. The investigations on sources didn’t solve my problem as I couldn’t find any option for setting background to transparent background.
Open Babel is a tool to work with molecular data in any way from converting one type to another, analyzing, molecular modeling, etc. It also has a method to convert MOL files into SVG or PNG images to represent them as 2D images.
subprocess module in Python provides us a variety of methods to start a process from a Python script. We may use these methods to run an external commands / programs, collect their output and manage them. An example use of it might be as following:
StarCluster loadbalancer command is regularly monitors the jobs in queue and it adds or removes nodes to the master node that is created beforehand to effectively complete the queue.
I was getting errors from StarCluster run due to not being able to find
.starcluster directory in
Uploading files to an AWS S3 storage can be difficult through the GUI with many files included or if your files are in a server where you don’t have a GUI option. Use following tool to transfer files to an S3 bucket.