Network Visualization Using Cytoscape

Cytoscape is a nice tool to visualize network for better understanding and delivery. I used it for in silico data network visualization and the result was really pretty. Now, I have networks constructed using experimental data from HPN-DREAM Challenge. In this post, I want to demonstrate how to visualize a network with scores. I’m using Cytoscape 2.8 on Ubuntu 12. First, the network will be read from a SIF file which is default format of Cytoscape for networks.