Below you will find pages that utilize the taxonomy term “install”
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How to Install Sambamba on Linux
Sambamba is a great utility to work with alignment file formats in bioinformatics such as BAM and CRAM. Follow below steps on any 64-bit Linux machine to install (this guide installs version 0.6.8 go to Sambamba releases page for the most up-to-date version):
Create a softwares directory (optional but recommended)
cd ~/ mkdir softwares cd softwares/ Download the static executable
wget https://github.com/biod/sambamba/releases/download/v0.6.8/sambamba-0.6.8-linux-static.gz Unzip the package and rename the executable unpacked
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Correct Installation and Configuration of pip2 and pip3
You may have to keep both Python version, the old 2 and 3, at the same time due to your projects and they will require corresponding pip installation so you can separately install and maintain packages for both version.
There are multiple ways of installing pip to a system but the version configuration and setting the default version for pip executable can be tricky.
Below is the easiest solution I’ve found.
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How to Install Valgrind on macOS High Sierra
Valgrind is a programming tool for memory debugging, memory leak detection and profiling. Its installation for macOS High Sierra seems problematic and I wanted to write this post to tell the solution that worked for me. I use Homebrew to install it which is the recommended way and the solution also uses it.
So, when you try installing right away, you may get the following error:
1brew install valgrind 2valgrind: This formula either does not compile or function as expected on macOS 3versions newer than Sierra due to an upstream incompatibility.
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How to Install Numpy Python Package on Windows
Numpy (Numerical Python) is a great Python package that you should definitely make use of if you’re doing scientific computing
Installing it on Windows might be difficult if you don’t know how to do it via command line. There are unofficial Windows binaries for Numpy for Windows 32 and 64 bit which make it super easy to install.
Go to the link below and download the one for your system and Python version:http://www.
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Install Ensembl API and BioPerl 1.2.3 on Your System
I’m going to work on a project that requires lots of queries on Ensembl databases so I wanted to install Ensembl API to begin with. Since it’s programmed in Perl, I will be using Perl in this project.
There is a nice tutorial on Ensembl website for API installation. Here I will describe some steps.
1. Download the API and BioPerl
Go to Ensembl FTP ftp://ftp.ensembl.org/pub/ and download “ensembl-api.tar.gz” or click here