ClipCrop Installation on Linux Mint 16 nvm, Node, npm Included

ClipCrop is a tool for detecting structural variations from SAM files. And it’s built with Node.js. ClipCrop uses two softwares internally so they should be installed first. Install SHRiMP2 SHRiMP is a software package for aligning genomic reads against a target genome. 1$ mkdir ~/software 2$ cd ~/software 3$ wget http://compbio.cs.toronto.edu/shrimp/releases/SHRiMP_2_2_3.lx26.x86_64.tar.gz 4$ tar xzvf SHRiMP_2_2_3.lx26.x86_64.tar.gz 5$ cd SHRiMP_2_2_3 6$ file bin/gmapper 7$ export SHRIMP_FOLDER=$PWD Install BWA BWA is a software package for mapping low-divergent sequences against a large reference genome.